DESeq2

    • requires table of integer values (count data)

→ Install

source("http://bioconductor.org/biocLite.R")

biocLite("DESeq2")

Help

help(package="DESeq2",help="html")

→ Run DESeq2 on a data matrix

Reference

citation("DESeq2")

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.

InstallMichael I Love, Wolfgang Huber, and Simon Anders.

Genome Biology 2014 15:550